ATF7IP2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003603
Fusion event
HBV-ATF7IP2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p13.13
Reference genome
GRCh37/hg19
Start
10523240/10429383 (Hg38)
End
10523240/10429383 (Hg38)
Location type
Intronic
Target gene
ATF7IP2
miRNAs that regulate target gene
hsa-mir-181a-5p ; hsa-mir-7-5p ; hsa-mir-3613-3p ; hsa-mir-4775 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-590-3p ; hsa-mir-548c-3p
Nearest miRNA
hsa-mir-1225/Upstream/4796817; hsa-mir-11401/Downstream/877057;
Nearest TSS
ENST00000527434/Upstream/482; ENST00000565616/Downstream/1212;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/42986, chr16-CpG: 86/Downstream/150640
Upstream sequence
attagggtcttaattaatgaagagtattgtgctgttttttggatttATTTAGTATATATATCAGGTTTGTTTGTGTGtttgttttaagacagagtctcgc
Downstream sequence
tctgtcatccaggctggagtacaatggcacgatctcggctcactgcaacctctgcctcctgagttcaagtgattcgcttgcctcggcctcccagaagctg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate