SLC35F1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003609
Fusion event
HBV-SLC35F1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
118445789/118124626 (Hg38)
End
118445789/118124626 (Hg38)
Location type
Intronic
Target gene
SLC35F1
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-1257 ; hsa-mir-3650 ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-4790-3p ; hsa-mir-4649-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-665 ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929
Nearest miRNA
hsa-mir-10398/Upstream/11340406; hsa-mir-1202/Downstream/944421;
Nearest TSS
ENST00000381078/Upstream/217100; ENST00000621341/Downstream/29816;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/204220, chr6-CpG: 121/Downstream/525873
Upstream sequence
ctgacctcaggcgatctgcccgtctcgggcttctaaagtgctgggattacaggtgtgagccaccatgcccggcACAAAATTAAATTTCAAGTGTTTGTAT
Downstream sequence
GCATTGGATAATGTCCCAGGGTGACCTATCATGACCATTTGAAGGTTGTAAACCTGATGAGAGTCGCAAATCCTGATTTACAAACATTTTTTTCTTCTCC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate