Basic Information
VIS ID
TVIS10003610
Fusion event
HBV-LOC101927506 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr8
Cytoband
p23.3
Reference genome
GRCh37/hg19
Start
25641/75641 (Hg38)
End
25641/75641 (Hg38)
Location type
Intronic
Target gene
LOC101927506
Nearest miRNA
hsa-mir-10400/Downstream/1725484;
Nearest TSS
ENST00000518652/Upstream/3024; ENST00000610248/Downstream/91402;
Nearest CpG islands
None/Target, None/Upstream, chr8-CpG: 109/Downstream/6770
Nearby gene
OR4F21(+90445) ;
Upstream sequence
TGAGCAAAAATAGAATTCACTTCCATCAAAAGCCTCTTGGCTCTTCCTTCTATAAGGCCCACTACAGGCAGCCCAGCCTATTGGCATCGGAAttttttct
Downstream sequence
aaataaataaataaaAGTTggccgggcgcggtgtctcacacctgtaatcccagcactttgggaggtggaggcgggcggatcacaaggtcaggagatcgag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate