Basic Information
VIS ID
TVIS10003612
Fusion event
HBV-chr2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
31707284/31484418 (Hg38)
End
31707284/31484418 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1301/Upstream/3487969; hsa-mir-10b/Downstream/1047735;
Nearest TSS
ENST00000437798/Upstream/69703; ENST00000435713/Downstream/42524;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/249631, chr2-CpG: 99/Downstream/95805
Nearby gene
XDH(-69673) ; SRD5A2(+42372) ;
Upstream sequence
cagccagttcagcctgggtaagaactcttattgaaaaactggtgcaatcatttggaagatgtatgacactctggccatttgagttaccagagtacttgca
Downstream sequence
ttggttctttctcatctctctgtgtggatggttttttaactgcacgtagactgagtacagtcaatagacttgttttctggttattttctcagggccaagg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate