Basic Information
VIS ID
TVIS10003613
Fusion event
HBV-chr17 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
58111829/60034468 (Hg38)
End
58111829/60034468 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/193131; hsa-mir-1250/Downstream/8557;
Nearest TSS
ENST00000595228/Upstream/69372; ENST00000589740/Downstream/13848;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/7436, chr17-CpG: 57/Downstream/7923
Nearby gene
TBC1D3P1-DHX40P1(-15493) ; MIR4737(+8557) ;
Upstream sequence
TTGAAAGTagtggttctcaaacttgtctgcaactagaatcacttgtgcagcttttaaaactctcagtggcaagaccgtactccagaccacaaaactcagg
Downstream sequence
ggtggggtgaagggggctgttcatcagtagtgtaaatgtccccaggtgattttaatgagcagccaggtttgagaaccaGCGTCCTAATGGGAGCAACCTC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate