LOC653653 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003614
Fusion event
HBV-LOC653653 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr17
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
58189430/60112069 (Hg38)
End
58189430/60112069 (Hg38)
Location type
Promoter
Target gene
LOC653653
Nearest miRNA
hsa-mir-10226/Upstream/68964; hsa-mir-1250/Downstream/2832146;
Nearest TSS
ENST00000595228/Upstream/32760; ENST00000585705/Downstream/28012;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/33003, chr17-CpG: 164/Downstream/7444
Upstream sequence
GGTTGCTCCCATTAGGACGCtggttctcaaacctggctgctcattaaaatcacctggggacatttacactactgatgaacagcccccttcaccccacccc
Downstream sequence
tgagttttgtggtctggagtacggtcttgccactgagagttttaaaagctgcacaagtgattctagttgcagacaagtttgagaaccactACTTTCAAAC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate