VISDB Viral Integration Site DataBase

VIS ID

TVIS10003616

Fusion event

HBV-EIF4A3 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr17

Cytoband

q25.3

Reference genome

Start

End

78115665/80141866 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-877-3p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-331-3p ; hsa-mir-99b-5p ; hsa-mir-183-5p ; hsa-mir-3115 ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-593-5p ; hsa-mir-3976 ; hsa-mir-6871-5p ; hsa-mir-6124 ; hsa-mir-8087 ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-561-3p ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-665 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-3622b-5p ; hsa-mir-7160-5p ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-7162-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6888-5p ; hsa-mir-5197-5p

Nearest miRNA

hsa-mir-10226/Upstream/42989; hsa-mir-1250/Downstream/277552;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/32939, chr17-CpG: 125/Downstream/4657

Upstream sequence

AGAATGGCAAATTACCTGAATATCCAAACACTGGAGGACTGAGATACTGAAGGTGGCTGTTTTTCCTGTGCCGGACTGAGACCTATTCAAGGAAACAAAA

Downstream sequence

GCAGTGGGATTAGAGGGAGGACAGGCCACGCCACAGCTGCACTCCAAGGCCTGGGCTCCAGAGGCACTTAGGTACCTTCTTCCAGCAAGCCCCCGTACCT