VISDB Viral Integration Site DataBase

VIS ID

TVIS10003618

Fusion event

HBV-MFSD14B integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr9

Cytoband

q22.32

Reference genome

Start

End

97190452/94428170 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-7-5p ; hsa-mir-192-5p ; hsa-mir-128-3p ; hsa-mir-641 ; hsa-mir-3185 ; hsa-mir-3617-5p ; hsa-mir-122-5p ; hsa-mir-574-5p ; hsa-mir-940 ; hsa-mir-1255a ; hsa-mir-1255b-5p ; hsa-mir-3134 ; hsa-mir-3714 ; hsa-mir-4433a-3p ; hsa-mir-4534 ; hsa-mir-4722-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-4433b-3p ; hsa-mir-8082 ; hsa-mir-6744-5p ; hsa-mir-539-5p ; hsa-mir-6501-3p ; hsa-mir-2278 ; hsa-mir-3910 ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-124-3p ; hsa-mir-506-3p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6077 ; hsa-mir-1286 ; hsa-mir-5000-3p ; hsa-mir-4436a ; hsa-mir-6165 ; hsa-mir-4802-3p ; hsa-mir-365a-3p ; hsa-mir-365b-3p ; hsa-mir-532-5p

Nearest miRNA

hsa-let-7a-1/Upstream/249250; hsa-mir-12126/Downstream/381792;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/52796, chr9-CpG: 73/Downstream/210900

Upstream sequence

GCAGGCAGCCTCCATATAAACGATGTGCGTTTCTCCACCACTCAGGCTTTGACAGCTGGTATCTACTTCACTCTAGCAAGCTGAGGTCTCTCCTCCTGAT

Downstream sequence

GTTTTTGTTTTGCATTTTACCATGTTTTTGTGATGCATGTGACAAATCAAGTTATTCAACAGTTCTAGTCTTTATATTCTTTAAAGAAAATGTCTGTATC