Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS10003631
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003631
Fusion event
HBV-CCNE1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
30303748/29812841 (Hg38)
End
30303748/29812841 (Hg38)
Location type
Intronic
Target gene
CCNE1
miRNAs that regulate target gene
hsa-mir-15b-5p
;
hsa-mir-503-5p
;
hsa-mir-424-5p
;
hsa-mir-16-5p
;
hsa-mir-15a-5p
;
hsa-mir-107
;
hsa-mir-185-5p
;
hsa-mir-103a-3p
;
hsa-mir-26b-5p
;
hsa-mir-26a-5p
;
hsa-mir-16-1-3p
;
hsa-mir-195-5p
;
hsa-mir-215-5p
;
hsa-mir-192-5p
;
hsa-mir-151a-3p
;
hsa-mir-342-5p
;
hsa-mir-125b-5p
;
hsa-mir-92a-3p
;
hsa-mir-383-3p
;
hsa-mir-497-5p
;
hsa-mir-4524a-5p
;
hsa-mir-4694-3p
;
hsa-mir-4524b-5p
;
hsa-mir-6838-5p
;
hsa-mir-7-5p
;
hsa-mir-4477a
;
hsa-mir-524-5p
;
hsa-mir-520d-5p
;
hsa-mir-5191
;
hsa-mir-646
;
hsa-mir-25-5p
;
hsa-mir-30c-2-3p
;
hsa-mir-144-5p
;
hsa-mir-892b
Nearest miRNA
hsa-mir-10395/Upstream/9413487; hsa-let-7e/Downstream/5309859;
Nearest TSS
ENST00000633603/Upstream/116;
ENST00000576532/Downstream/4362;
Nearest CpG islands
None/Target,
chr19-CpG: 112/Upstream/67
,
chr19-CpG: 21/Downstream/30692
Nearest cancer related gene
CCNE1
(OG, No orient, 0)
Upstream sequence
CTCGCTCCAGGAAGAGGAAGGCAAACGTGACCGTTGTGAGTACAAAAGAGACAGGTTGGGGAGCATCCCCCCCATCTCACCTGGGTACCCGACTTGGCTC
Downstream sequence
TGCCTACGGGGGCGGGGGTCCCTTGGGCAGGAACGGAGCTCATAACCTGATCAGCTTTCTCTTCTTCTCTCTGTTTTTGTCTTGTTTGGTGTGTTTCCTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Sample Information
×
Sample name
087605T
Sample type
Tumor
Gender
Female
CpG Island Information
×
Download
Curate