Basic Information
VIS ID
TVIS10003638
Fusion event
HBV-LOC105374602 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
51026/50911 (Hg38)
End
51026/50911 (Hg38)
Location type
Intronic
Target gene
LOC105374602
Nearest miRNA
hsa-mir-10397/Downstream/1011985;
Nearest TSS
ENST00000502646/Downstream/41240;
Nearest CpG islands
chr5-CpG: 87/Target, None/Upstream, None/Downstream
Nearby gene
PLEKHG4B(+89347) ;
Upstream sequence
caaatccactcacattctgaggtattgagggttaggacgtcagcatatagattttgtggggaatatacaatttagcccagaacatatgaccaagatgaag
Downstream sequence
CCAACGCCTAATCCTAATTCCAAACCTGGGGATGCCCGGGGCCCGGCGTCTTCATCCCGCTGGGCACTGGGCCGGGGAAGCTGACCCGGCGACCTCAGCT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate