CD163 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003640
Fusion event
HBV-CD163 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
7635416/7482820 (Hg38)
End
7635416/7482820 (Hg38)
Location type
Intronic
Target gene
CD163
Nearest miRNA
hsa-mir-141/Upstream/518629; hsa-let-7i/Downstream/1756647;
Nearest TSS
ENST00000382841/Upstream/2923; ENST00000345088/Downstream/672;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/42386, chr12-CpG: 23/Downstream/145587
Upstream sequence
GGATCCCGACTGCAATAAAGGATGACTGACGGGATGAGCGACCTAAGTAAAAGTAAATATCAAGAGATATGATCATGTCTTATCGAAAAGATCAAGGTCC
Downstream sequence
CTAGTTACTGATTCTCTCTTAGGTCAAATACTTGATCCCTGAGGTAAATATCAAATCCTCAGAACGTCTGACCTAAAATTTCTAAACAAGAAAAATTCTA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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