CCDC91 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003649
Fusion event
HBV-CCDC91 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
28517564/28364631 (Hg38)
End
28517564/28364631 (Hg38)
Location type
Intronic
Target gene
CCDC91
miRNAs that regulate target gene
hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-5689
Nearest miRNA
hsa-mir-1244-3/Upstream/2490552; hsa-let-7i/Downstream/13959069;
Nearest TSS
ENST00000382841/Upstream/61997; ENST00000535212/Downstream/85767;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/173657, chr12-CpG: 91/Downstream/784411
Upstream sequence
TTGATTTTGTCAACTTATTTTATCCCTAACGCTGAGGGTGGGAGGAATTAAAATACAATTGGCCTAATATATTTGCAGATTCCATAACCATGGATGAGAA
Downstream sequence
ATGTTTGGGGAAGAAAAGCAATAAAAATAACAGTACAACGGTAAAAAGTAACACAAATTACTTGCTATCTAGAAAAAGAGAAGCATACGGTAAAATAATT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate