Basic Information
VIS ID
TVIS10003666
Fusion event
HBV-chr4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q21.23
Reference genome
End
85351748/84430595 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1677165; hsa-mir-1243/Downstream/1291873;
Nearby gene
LPCAT1(-824721) ; NKX6-1(+62688) ;
Upstream sequence
tttgttttttagagatggggtcttgctatgttgcccaggctggtctcgaactcttgacttcaggagaccctcccaacttggcctcccgaagtgctgggat
Downstream sequence
tagctcaaggtgagttaaagatttaaatatacgatctgaaactgttaaaatcctagaagaaaacctaggaaaaactcttcaggacattggactaggcaaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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