Basic Information
VIS ID
TVIS10003672
Fusion event
HBV-chr4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q31.23
Reference genome
GRCh37/hg19
Start
150838985/149917833 (Hg38)
End
150838985/149917833 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2135165; hsa-mir-1305/Downstream/2571494;
Nearest TSS
ENST00000502981/Upstream/21600; ENST00000505586/Downstream/38375;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1471929, chr4-CpG: 161/Downstream/160265
Nearby gene
NR3C2(-1475313) ; DCLK2(+160441) ;
Upstream sequence
actaaaaatacaaaagttagccgggcgtggtggcaggcgcctgtaatcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggcgta
Downstream sequence
gagctaactatcctaaatatatatgcacccaacacaggagcacccagattcataaagcaagtcctgagtgacctacaaagagacttagactcccacacat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate