Basic Information
VIS ID
TVIS10003676
Fusion event
HBV-LOC105373893 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
GRCh37/hg19
Start
221095463/220230742 (Hg38)
End
221095463/220230742 (Hg38)
Location type
Intronic
Target gene
LOC105373893
Nearest miRNA
hsa-mir-10b/Upstream/324177; hsa-mir-1244-1/Downstream/4779719;
Nearest TSS
ENST00000437798/Upstream/103196; ENST00000414512/Downstream/219937;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/602677, chr2-CpG: 260/Downstream/1340268
Nearby gene
MIR4268(-324177) ; EPHA4(+1187284) ;
Upstream sequence
attaattttagtgtctgtatatccatgcaagaatataagatctatgtggacagattttttttgtctgttttgttcactgctgtgttctcaatgtccagaa
Downstream sequence
cagcacctagagcacagaagttggtcacaatacatattaaataaacagatgaTGAACTTTGGACTATGATATAAATTAGCCTATGTGAGTCAGATATTTC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate