RERE _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003679
Fusion event
HBV-RERE integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p36.23
Reference genome
GRCh37/hg19
Start
143282912/8807411 (Hg38)
End
143282912/8807411 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
RERE
miRNAs that regulate target gene
hsa-mir-200b-3p ; hsa-mir-429 ; hsa-mir-92b-3p ; hsa-mir-301a-3p ; hsa-mir-320a ; hsa-mir-4681 ; hsa-mir-4722-3p ; hsa-mir-4763-5p ; hsa-mir-4769-3p ; hsa-mir-596 ; hsa-mir-6501-3p ; hsa-mir-6727-3p ; hsa-mir-6817-5p
Nearest miRNA
hsa-mir-12136/Upstream/2377515; hsa-mir-101-1/Downstream/59091;
Nearest TSS
ENST00000473358/Upstream/360; ENST00000442636/Downstream/10054;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/103890, chr1-CpG: 100/Downstream/9542
Nearby gene
ANKRD20A12P(-569307) ; MIR6077-1(+390009) ;
Nearest cancer related gene
RERE(OG, No orient, 0)
Upstream sequence
TCGTTTACACGGAAAGACttcttaaactgccatgaatcagggtcagggggaggtcttgttacaacacagatctgtgcatctccggggtttgattGTGGCA
Downstream sequence
AGGATGCTGCTGGTGTCAAAACCACAACGTGGGAACCACAGAACCACTAGTTGGTTTTCAGTGTTTCAGTGCATACAATTCCTAATATATCTGGCCAAGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate