Basic Information
VIS ID
TVIS10003683
Fusion event
HBV-chr6 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
58777742/58451464 (Hg38)
End
58777742/58451464 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/1061252; hsa-mir-10524/Downstream/12925496;
Nearest TSS
ENST00000381078/Upstream/412998; ENST00000622616/Downstream/2271684;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/489914, chr6-CpG: 45/Downstream/3834486
Nearby gene
GUSBP4(-490018) ;
Upstream sequence
gaggcaggagaatggtgtgaacccggaaggcggagcttgcagtgagccgagatcgcgccgctgcactccagcctgggcgacagagccagacttcgtctca
Downstream sequence
atgatagaaaaggaaacatcttcatggaaaacatagatagaatcattctcagaaacaactttgtgatgtgtgcgttgaactcaccgtctttaaactttct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate