EEPD1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003686
Fusion event
HBV-EEPD1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
p14.2
Reference genome
GRCh37/hg19
Start
36311496/36271887 (Hg38)
End
36311496/36271887 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7C
Target gene
EEPD1
miRNAs that regulate target gene
hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-6508-3p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-8064 ; hsa-mir-6852-5p ; hsa-mir-6742-3p ; hsa-mir-939-3p ; hsa-mir-216b-3p
Nearest miRNA
hsa-mir-1183/Upstream/1331053; hsa-mir-10399/Downstream/647470;
Nearest TSS
ENST00000635602/Upstream/40780; ENST00000487069/Downstream/9196;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/118062, chr7-CpG: 81/Downstream/94874
Upstream sequence
atttcgtctttcttctttcttctttctctttctttctttctctctttcttttctttcttttttttttttttttttttttttttttAAAAAAAAAAAGGGG
Downstream sequence
tctattctattcgagacagagtctcactctgtcacccaggctggagtgcaatggcacaatctcggcccactgcagtcttcacctcccagattcaagtgat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate