Basic Information
VIS ID
TVIS10003714
Fusion event
HBV-chr16 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
33061763/33050442 (Hg38)
End
33061763/33050442 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/2156457; hsa-mir-11401/Downstream/1113136;
Nearest TSS
ENST00000527434/Upstream/41267; ENST00000562827/Downstream/41147;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/21156, chr16-CpG: 114/Downstream/8451
Nearby gene
SLC6A10P(-165300) ; TP53TG3C(+143822) ;
Upstream sequence
ctccattgagcttcttttataaaggcactaatcccattcataagggctcggcccccaagacccggtcacctcccaagtgttctgctctccCTGATCTGTG
Downstream sequence
TCATATACAGACTCTCTTGGATTCCTTACCAATTGCTTGAGAGATCGCAGTGGGTTTGTGgggaaaaagttttcaagatgatggatctttcccaacttct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate