Basic Information
VIS ID
TVIS10003717
Fusion event
HBV-chr10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
42615730/42120282 (Hg38)
End
42615730/42120282 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/6479030; hsa-mir-107/Downstream/877281;
Nearest TSS
ENST00000439456/Upstream/3667101; ENST00000442306/Downstream/65057;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/6902, chr10-CpG: 166/Downstream/29091
Nearby gene
LOC441666(+211584) ;
Upstream sequence
gattgggagaccgctgacagctgcagaaattgggaaagatccatcatcttgaaaactttttcccCACAAACCCACTGTGATCTGTCAAGCAATTGGTAAG
Downstream sequence
GAATCCAAGAGAGTCTGTATATGACACAGATCAGggagagcagaacacttgggaggtgaccaggtcttgggagccgagcccttatgaatgggattagtgc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate