Basic Information
VIS ID
TVIS10003724
Fusion event
HBV-chr2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
91661027/91468653 (Hg38)
End
91661027/91468653 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/2656199; hsa-mir-10b/Downstream/5329625;
Nearest TSS
ENST00000437798/Upstream/1102916; ENST00000567067/Downstream/111683;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/25085, chr2-CpG: 293/Downstream/8408
Nearby gene
LSP1P4(+163682) ;
Upstream sequence
actaatcccattcataagggctcggcccccaagacctggtcacctcccaagtgttctgctctccCTGATCTGTGTCATATACAGACTCTCTTGGATTCCT
Downstream sequence
TACCAATTGCTTGAGAGATCGCAGTGGGTTTGTGCggaaaaagttttcaagatgatggatctttcccaacttctgcagctgtcagcggtctcccaatctc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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