Basic Information
VIS ID
TVIS10003725
Fusion event
HBV-LINC01945 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
132765560/132007987 (Hg38)
End
132765560/132007987 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LINC01945
Nearest miRNA
hsa-mir-1285-2/Upstream/516751; hsa-mir-10b/Downstream/248979;
Nearest TSS
ENST00000437798/Upstream/13826; ENST00000622084/Downstream/144751;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/177277, chr2-CpG: 65/Downstream/1803
Nearby gene
C2orf27B(-206326) ; ANKRD30BL(+139604) ;
Upstream sequence
aagttgggaaagatccatcatcttgaaaactttttcccCACAAACCCACTGCGATCTCTCAAGCAATTGGTAAGGAATCCAAGAGAGTCTGTATATGACA
Downstream sequence
CAGATCAGggagagcagaacacttgggaggtgaccaggtcttgggggctgagcccttatgaatgggattagtgcctttataaaagaagctcaatggagtt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate