Basic Information
VIS ID
TVIS10003741
Fusion event
HBV-chr14 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
26189070/25719864 (Hg38)
End
26189070/25719864 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/1576299; hsa-mir-1185-1/Downstream/1188778;
Nearest TSS
ENST00000550708/Upstream/592866; ENST00000547786/Downstream/423441;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/669458, chr14-CpG: 30/Downstream/485093
Nearby gene
STXBP6(-669975) ; NOVA1(+726019) ;
Upstream sequence
cttgaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgctggattacatttattgatttgagggtgttgaac
Downstream sequence
cagccttgcatcccagggataaagcccacttgatcatggtggataagctttttgatgtgctgctggattcagtttgccagtattttattgaggattttta
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate