AGBL4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003763
Fusion event
HBV-AGBL4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
49433530/48967858 (Hg38)
End
49433530/48967858 (Hg38)
Location type
Intronic
Target gene
AGBL4
Nearest miRNA
hsa-mir-12136/Upstream/4422306; hsa-mir-101-1/Downstream/2091979;
Nearest TSS
ENST00000473358/Upstream/190889; ENST00000456002/Downstream/57737;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/68617, chr1-CpG: 34/Downstream/1055887
Upstream sequence
agcatagaacagaaagcagtcaaatttagctgaaAAACCAAGCCTAAGCGTGTTGATTAACTTGTTACAGGTAAGGTGTTGTTCTGTATGCTCTAGAATC
Downstream sequence
TCAGATGTGAAGAAACACAGCCACTCATCTCAGAGTTACTAATTTATAATCAGGGAAACTTTCTTCTCCTTTGGCAAGTTAACTGACTCGACtttgttgt
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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