Basic Information
VIS ID
TVIS10003767
Fusion event
HBV-LINC01934 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
182140518/181275791 (Hg38)
End
182140518/181275791 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA2G
Target gene
LINC01934
Nearest miRNA
hsa-mir-10b/Upstream/1414883; hsa-mir-1244-1/Downstream/29802;
Nearest TSS
ENST00000437798/Upstream/72435; ENST00000476089/Downstream/149958;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/294592, chr2-CpG: 119/Downstream/181243
Nearby gene
UBE2E3(-212364) ; MIR4437(+29802) ;
Upstream sequence
TGTTGAGTTAACTAAGCTGGAAGGGTATTTCCCTCTATTCTTTGCCTGCGTACTTCTGGGTTAATGTAAGGTGCAAGAGACACAGTGCATAAGATGTGCA
Downstream sequence
ctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaacccGggttaatgtgaggtgcaagagacacagtgcat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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