Basic Information
VIS ID
TVIS10003770
Fusion event
HBV-LINC00492 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr5
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
101938880/102603176 (Hg38)
End
101938880/102603176 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
FRA5F
Target gene
LINC00492
Nearest miRNA
hsa-mir-10397/Upstream/1786611; hsa-mir-103a-1/Downstream/7910653;
Nearest TSS
ENST00000502646/Upstream/21808; ENST00000501405/Downstream/2459;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/104140, chr5-CpG: 77/Downstream/151559
Upstream sequence
AAGTAATAGTTACTTCATGAACCATTATAAATTCAAACACATTTGAATCTACTGCTAGTACAGTTTCAAGGTACTGTAAGAGCTTCTGTTCTCAACCAGA
Downstream sequence
atggtatctcattgtggttttgatttgcatttctctaatgatcagggatattgaggtttttttcacatgtttgttggctaagtaaatgtcttcttttgaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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