Basic Information
VIS ID
TVIS10003777
Fusion event
HBV-chr10 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr10
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
58549126/56789366 (Hg38)
End
58549126/56789366 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA10C
Nearest miRNA
hsa-mir-1265/Upstream/2181409; hsa-mir-107/Downstream/515113;
Nearest TSS
ENST00000439456/Upstream/428091; ENST00000489785/Downstream/1478568;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/427852, chr10-CpG: 34/Downstream/1317255
Nearby gene
ZWINT(-428092) ; MIR3924(+515113) ;
Upstream sequence
taatttctcctgtgctttaaattttgtgttctccagaacagtttgctttaattatttttttagtctgctgaggttttctttttctttTTCCTTTTTTTTT
Downstream sequence
TTTTTTGCCTGTGTTTATTAAATTGCTTTTATCTTCAAAAAGGTAAGTTTACCTAGGAAGTGTTGTTTATGATTTCTTTGTTGTGGTCTATCTAGGTAGT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate