Basic Information
VIS ID
TVIS10003785
Fusion event
HBV-EPHA1-AS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr7
Cytoband
q35
Reference genome
GRCh37/hg19
Start
143164275/143467182 (Hg38)
End
143164275/143467182 (Hg38)
Location type
ncRNA_intronic
Target gene
EPHA1-AS1
Nearest miRNA
hsa-mir-10399/Upstream/84382; hsa-mir-153-2/Downstream/3910835;
Nearest TSS
ENST00000635602/Upstream/23729; ENST00000408916/Downstream/10691;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/85106, chr7-CpG: 73/Downstream/43710
Upstream sequence
ttgttgccaacaatagaaaaggaaatatctgcaaataaaaactagacagaatcattctcagaaagtgctttgtgatgtgtgcgttcaactcacagagttt
Downstream sequence
tcacctttgaaaTTCATTTtttttgtgagaataacaatattaacacatttaaagcacttagaataacacatgaggatgcatagcaacactgcgtatatat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate