Basic Information
VIS ID
TVIS10003797
Fusion event
HBV-ANKRD30BL integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
133007593/132250020 (Hg38)
End
133007593/132250020 (Hg38)
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
ANKRD30BL
Nearest miRNA
hsa-mir-1285-2/Upstream/758784; hsa-mir-10b/Downstream/6946;
Nearest TSS
ENST00000437798/Upstream/88065; ENST00000622084/Downstream/7949;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/211209, chr2-CpG: 23/Downstream/4019
Upstream sequence
tgagatgaacacacacatcacaaagcagtttatcataaatcttctttctagtttttatgtgaagatatttcctttttcaccataggcctcaaagcgctca
Downstream sequence
caaatatccctctgcacattctacaaaaacaccatttccaagcttttcaatcaaaagaatggtttaactctgtgagatgaatccacacatcacaaagtag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate