Basic Information
VIS ID
TVIS10003814
Fusion event
HBV-LINC02466 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
q28.2
Reference genome
GRCh37/hg19
Start
130666200/129745045 (Hg38)
End
130666200/129745045 (Hg38)
Location type
Intronic
Target gene
LINC02466
Nearest miRNA
hsa-mir-12113/Upstream/4237738; hsa-mir-1305/Downstream/13598415;
Nearest TSS
ENST00000502981/Upstream/440023; ENST00000508724/Downstream/26433;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/651301, chr4-CpG: 27/Downstream/1978147
Nearby gene
C4orf33(-632357) ;
Upstream sequence
acctgtgctgtttgccccctcctaaaattgtgggaagaagaattgggcagaaAGAAGGAAACATCCATTGAGACATTATTGTCATAACACTTCTGCTCTG
Downstream sequence
tctttctggggtagccagaatctatcacttgatggaccaacatatgtcaaatttaaacattcaggataaatataaaggtttcttaaagtatgatgcaaat
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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