ARHGAP32 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003831
Fusion event
HBV-ARHGAP32 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
128995945/129126050 (Hg38)
End
128995945/129126050 (Hg38)
Location type
Intronic
Target gene
ARHGAP32
miRNAs that regulate target gene
hsa-mir-132-3p ; hsa-mir-423-5p ; hsa-mir-183-5p ; hsa-mir-93-5p ; hsa-mir-6082 ; hsa-mir-139-5p ; hsa-mir-4799-5p ; hsa-mir-6501-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-2278 ; hsa-mir-3119
Nearest miRNA
hsa-let-7a-2/Upstream/603601; hsa-mir-4697/Downstream/1540685;
Nearest TSS
ENST00000527297/Upstream/59237; ENST00000605151/Downstream/38295;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/234712, chr11-CpG: 194/Downstream/152552
Upstream sequence
gcggctaccacacggattcaatgaaactttttataaatatgaggtaacatcttgtcttatttttcctctatcttgaaacaaagttacttcataatcctag
Downstream sequence
gtattatttcatcagtactcatcatcattcaattataccctatcatactagaaaaaaattttaagactaaaataaaaagtatatttttaaaaagggaaaa
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate