Basic Information
VIS ID
TVIS10003842
Fusion event
HBV-FAM209B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
55114414/56539358 (Hg38)
End
55114414/56539358 (Hg38)
Location type
Intronic
Target gene
FAM209B
Nearest miRNA
hsa-mir-103a-2/Upstream/2470873; hsa-mir-1-1/Downstream/782144;
Nearest TSS
ENST00000382410/Upstream/6112; ENST00000434176/Downstream/38205;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/70648, chr20-CpG: 490/Downstream/85865
Nearby gene
FAM209B(-2840) ; TFAP2C(+89944) ;
Upstream sequence
cctcctgcttagtctcccaaagtgctgggattacaggtatgagctaccacacccagccTATAAACCACATTTTTGTGTATAGCTCCATCCAGGGCACTAG
Downstream sequence
CAACTAAAGATGGGGATCCTCCGAAAGGGGAAATTGTCAAAACTCCTTAGAGCAAGTGCACCAAGGATGTAAATTAGAACAAAATCTGCTGTACATTTGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate