Basic Information
VIS ID
TVIS10003872
Fusion event
HBV-chr15 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
58874640/58582441 (Hg38)
End
58874640/58582441 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/3209407; hsa-mir-11181/Downstream/588742;
Nearest TSS
ENST00000557528/Upstream/40693; ENST00000560594/Downstream/5066;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/515863, chr15-CpG: 125/Downstream/166441
Nearby gene
LIPC(-13567) ; ADAM10(+12763) ;
Upstream sequence
ACAAGTGCCAGCTGCTCCCTTAACCCATGTGTGAAATCGGGTGCTTCCTACGGAGTGGGGTGCCTGGGTGCcagggctggcacttgcacaaccttatttt
Downstream sequence
cttaaattttgtgccctaggcacctcacttgcctctctgtagttccagttctgTTTAtattaattccttcttcatattttcttttgctttattttattct
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate