Basic Information
VIS ID
TVIS10003879
Fusion event
HBV-chr9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr9
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
29315962/29315964 (Hg38)
End
29315962/29315964 (Hg38)
Location type
Intergenic
Fragile sites / regions
FRA9C
Nearest miRNA
hsa-mir-101-2/Upstream/427009; hsa-let-7a-1/Downstream/3792728;
Nearest TSS
ENST00000422679/Upstream/645678; ENST00000541043/Downstream/1259048;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/101028, chr9-CpG: 20/Downstream/510564
Nearby gene
LINGO2(-102964) ; LINC01242(+1072971) ;
Upstream sequence
tttaatcgtgttccagggggttggaagtcctaccatcccataacctgaatttcacttaatGtttgtttttttttttttttttttggtttttttttttttt
Downstream sequence
TAATCTTCTCCTCCCTCTGTCCACATTTTGCTCTTTTCCAATAGACAATTGGGCAAGATAGGGGAAAGAACAGTCAGTTCTCTGCCTCAGCTGCAGTACT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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