Basic Information
VIS ID
TVIS10003887
Fusion event
HBV-UGDH-AS1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr4
Cytoband
p14
Reference genome
GRCh37/hg19
Start
39592356/39590736 (Hg38)
End
39592356/39590736 (Hg38)
Location type
ncRNA_intronic
Target gene
UGDH-AS1
Nearest miRNA
hsa-mir-12113/Upstream/178762; hsa-mir-1243/Downstream/911304;
Nearest TSS
ENST00000502981/Upstream/6778; ENST00000532680/Downstream/47494;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/62633, chr4-CpG: 76/Downstream/47800
Upstream sequence
agatttatatctaagtgtttcattttttgaagtgctaatgtaaacagtattgtgtttttaattttaaattccacttattcattgctgatatataggaaaa
Downstream sequence
ggttgctgtgagcccagattgcgccattgcactcccgcttgggagacagggcaacactctgtctcaaaaaaaaaaaaaaaaaaTTCCATAGTTATCACGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate