MYO16 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003898
Fusion event
HBV-MYO16 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
109653766/109001418 (Hg38)
End
109653766/109001418 (Hg38)
Location type
Intronic
Target gene
MYO16
miRNAs that regulate target gene
hsa-mir-4695-3p ; hsa-mir-602 ; hsa-mir-8485 ; hsa-mir-548b-3p ; hsa-mir-3133
Nearest miRNA
hsa-mir-1267/Upstream/1470170; hsa-mir-4502/Downstream/1339540;
Nearest TSS
ENST00000623511/Upstream/146122; ENST00000618966/Downstream/100501;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/504747, chr13-CpG: 22/Downstream/125917
Upstream sequence
CTGGGTGCTGACTGCGGGTCCCAATGTGGGGCTCTGGTAAGGAAAGCAACCCTTCTCTGCTGTGGCTACCAAGCACCCAAGTCCTCTATTTTTAAAATAA
Downstream sequence
GATTAGCTTATCGGCAGAGGTAGTATCCTCTATCAAGGTAAGAGTCAGTCATGGTGCTAGCAAAAGAGTAAACATGACCTTTCCCAAACAAGAATGGTAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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