Basic Information
VIS ID
TVIS10003902
Fusion event
HBV-chr12 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr12
Cytoband
q24.21
Reference genome
End
114940555/114502750 (Hg38)
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-let-7i/Upstream/1211142; hsa-mir-1178/Downstream/1645810;
Nearby gene
TBX5-AS1(-89918) ; TBX3(+167504) ;
Nearest cancer related gene
TBX3(OG, +167504) ;
Upstream sequence
AGGGAGATTGGTGATCAGTCTTCAAACTTGGTCTAGTGCAAGCGACCCACTGGGTCCCTGTGCCCCCATCTCCCAGGACCCACAGGATCCCATTGCCTCA
Downstream sequence
GAAAAATGACATTTCTTTGGTCTCTGGATAGAAACAGACTAAGGGACTGAAGTGGTCCATGCCCTGTTGGTGATGGCTCCCTTTTTCATGACATCTATTC
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate