THAP8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003903
Fusion event
HBV-THAP8 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr19
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
36544412/36053510 (Hg38)
End
36544412/36053510 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
THAP8
miRNAs that regulate target gene
hsa-mir-3149 ; hsa-mir-6788-3p ; hsa-mir-411-5p ; hsa-mir-4775 ; hsa-mir-193b-5p ; hsa-mir-92b-5p ; hsa-mir-4735-5p ; hsa-mir-7845-5p ; hsa-mir-590-3p
Nearest miRNA
hsa-mir-10395/Upstream/707883; hsa-let-7e/Downstream/3356113;
Nearest TSS
ENST00000633603/Upstream/20167; ENST00000608676/Downstream/867;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/20525, chr19-CpG: 111/Downstream/589
Upstream sequence
caggcatggtggcgcgtgcctctggtcccagctacttggtagggtgaggtgggaggatcacttgagcccgggaggtcgaggttgcagtgagctgtgatcg
Downstream sequence
ttccactgcattccagcctgggcgacaaagcgatcttgtctcaaaaaaaaaaaaaaaaaaaagcaaagaaatgttttttcctagtaattcttccaccaac
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate