Basic Information
VIS ID
TVIS10003904
Fusion event
HBV-LOC105369534 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
121116371/121245662 (Hg38)
End
121116371/121245662 (Hg38)
Location type
Intronic
Target gene
LOC105369534
Nearest miRNA
hsa-mir-10392/Upstream/1932650; hsa-let-7a-2/Downstream/854095;
Nearest TSS
ENST00000527297/Upstream/99586; ENST00000534455/Downstream/46791;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/87444, chr11-CpG: 75/Downstream/46873
Nearby gene
TECTA(-54856) ; SC5D(+47017) ;
Upstream sequence
ATCTCTTAGCCTAGACTAATGTATAATACTATTCATGTCATTTTCCACCATCCCTAATGTGAGAGATTGTAAAATCCAACCACCTTTACAAATATATATG
Downstream sequence
CTCTGGAGTATGTTTATGCTTCTATAACAAAAATATTCATGAAACTCAACAGAAGGGTATTCCAGATCTAGTCTAGATACTGTGGAATTTATTTATTGAG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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