Basic Information
VIS ID
TVIS10003905
Fusion event
HBV-LOC105369534 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr11
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
121116328/121245619 (Hg38)
End
121116328/121245619 (Hg38)
Location type
Intronic
Target gene
LOC105369534
Nearest miRNA
hsa-mir-10392/Upstream/1932607; hsa-let-7a-2/Downstream/854138;
Nearest TSS
ENST00000527297/Upstream/99543; ENST00000534455/Downstream/46834;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/87401, chr11-CpG: 75/Downstream/46916
Nearby gene
TECTA(-54813) ; SC5D(+47060) ;
Upstream sequence
CCTATGCATGTGCTATGTGCTTATTTTGCTTAATGCTAATCTAATCTCTTAGCCTAGACTAATGTATAATACTATTCATGTCATTTTCCACCATCCCTAA
Downstream sequence
TGTGAGAGATTGTAAAATCCAACCACCTTTACAAATATATATGCTCTGGAGTATGTTTATGCTTCTATAACAAAAATATTCATGAAACTCAACAGAAGGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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