hsa-mir-891b _LIHC.png
hsa-mir-329-5p _LIHC.png
hsa-mir-4659a-3p _LIHC.png
hsa-mir-130b-3p _LIHC.png
TNRC6B _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003911
Fusion event
HBV-TNRC6B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr22
Cytoband
q13.1
Reference genome
End
40482595/40086591 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-183-5p ; hsa-mir-7-5p ; hsa-mir-103a-3p ; hsa-mir-32-5p ; hsa-mir-21-5p ; hsa-mir-19b-3p ; hsa-mir-18a-5p ; hsa-mir-16-5p ; hsa-mir-1229-3p ; hsa-mir-744-5p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-125b-5p ; hsa-mir-23b-3p ; hsa-mir-222-3p ; hsa-mir-99a-5p ; hsa-mir-31-5p ; hsa-let-7b-5p ; hsa-mir-18b-5p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-1297 ; hsa-mir-4465 ; hsa-mir-5697 ; hsa-mir-29b-1-5p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-603 ; hsa-mir-543 ; hsa-mir-3658 ; hsa-mir-3941 ; hsa-mir-6757-3p ; hsa-mir-8485 ; hsa-mir-19a-3p ; hsa-mir-1249-5p ; hsa-mir-6797-5p ; hsa-mir-4269 ; hsa-mir-3150b-3p ; hsa-mir-4784 ; hsa-mir-6715b-5p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-548at-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-561-3p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-15a-5p ; hsa-mir-107 ; hsa-mir-15b-5p ; hsa-mir-186-3p ; hsa-mir-195-5p ; hsa-mir-378a-5p ; hsa-mir-330-3p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-4310 ; hsa-mir-4729 ; hsa-mir-6838-5p ; hsa-mir-7157-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-891b ; hsa-mir-5586-5p ; hsa-mir-6849-3p ; hsa-mir-4781-3p ; hsa-mir-3120-3p ; hsa-mir-148a-3p ; hsa-mir-130a-3p ; hsa-mir-152-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-148b-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-3688-3p ; hsa-mir-4643 ; hsa-mir-506-3p ; hsa-mir-124-3p ; hsa-mir-5186 ; hsa-mir-1-5p ; hsa-mir-4753-5p ; hsa-mir-513a-5p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-101-5p ; hsa-mir-3151-5p ; hsa-mir-6721-5p ; hsa-mir-486-3p ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-6804-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-1825 ; hsa-mir-759 ; hsa-mir-500b-3p ; hsa-mir-4482-5p ; hsa-mir-3130-5p ; hsa-mir-6515-5p ; hsa-mir-7847-3p ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-4533 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-1252-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-6807-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-3653-3p ; hsa-mir-299-5p ; hsa-mir-4511 ; hsa-mir-548b-3p ; hsa-mir-6863 ; hsa-mir-210-3p ; hsa-mir-4776-5p ; hsa-mir-3619-3p ; hsa-mir-3654 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-2682-3p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-548c-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-744-3p ; hsa-mir-6868-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-197-3p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-302a-5p ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-627-3p ; hsa-mir-4742-5p ; hsa-mir-4433a-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-1197 ; hsa-mir-4436a ; hsa-mir-4459 ; hsa-mir-4519 ; hsa-mir-4779 ; hsa-mir-5000-3p ; hsa-mir-92a-2-5p ; hsa-mir-129-5p ; hsa-mir-2113 ; hsa-mir-329-5p ; hsa-mir-4464 ; hsa-mir-4748 ; hsa-mir-5010-3p ; hsa-mir-6509-5p
Nearest miRNA
hsa-mir-1286/Upstream/2097738; hsa-let-7a-3/Downstream/727292;
Upstream sequence
atgatgatatgtttaggttcatcttatgcatcttctgtctcagccctcagtcatttcttcagggagctctcgttcttttcagcaggaaaggatatatgga
Downstream sequence
ggcacatttggatgctTGAACAATGGATGACAGACTTTTTAATAGATACTTATCAGAATATCTGTAGAGTTCAAAAGATGTCTTCTTTCACCTTGAATTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate