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TVIS10003911
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003911
Fusion event
HBV-TNRC6B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr22
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
40482595/40086591 (Hg38)
End
40482595/40086591 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
TNRC6B
miRNAs that regulate target gene
hsa-mir-183-5p
;
hsa-mir-7-5p
;
hsa-mir-103a-3p
;
hsa-mir-32-5p
;
hsa-mir-21-5p
;
hsa-mir-19b-3p
;
hsa-mir-18a-5p
;
hsa-mir-16-5p
;
hsa-mir-1229-3p
;
hsa-mir-744-5p
;
hsa-mir-484
;
hsa-mir-320a
;
hsa-mir-125b-5p
;
hsa-mir-23b-3p
;
hsa-mir-222-3p
;
hsa-mir-99a-5p
;
hsa-mir-31-5p
;
hsa-let-7b-5p
;
hsa-mir-18b-5p
;
hsa-mir-26a-5p
;
hsa-mir-26b-5p
;
hsa-mir-1297
;
hsa-mir-4465
;
hsa-mir-5697
;
hsa-mir-29b-1-5p
;
hsa-mir-362-3p
;
hsa-mir-329-3p
;
hsa-mir-603
;
hsa-mir-543
;
hsa-mir-3658
;
hsa-mir-3941
;
hsa-mir-6757-3p
;
hsa-mir-8485
;
hsa-mir-19a-3p
;
hsa-mir-1249-5p
;
hsa-mir-6797-5p
;
hsa-mir-4269
;
hsa-mir-3150b-3p
;
hsa-mir-4784
;
hsa-mir-6715b-5p
;
hsa-mir-520g-3p
;
hsa-mir-520h
;
hsa-mir-548at-5p
;
hsa-mir-1321
;
hsa-mir-4739
;
hsa-mir-4756-5p
;
hsa-mir-561-3p
;
hsa-mir-6756-5p
;
hsa-mir-6766-5p
;
hsa-mir-15a-5p
;
hsa-mir-107
;
hsa-mir-15b-5p
;
hsa-mir-186-3p
;
hsa-mir-195-5p
;
hsa-mir-378a-5p
;
hsa-mir-330-3p
;
hsa-mir-424-5p
;
hsa-mir-497-5p
;
hsa-mir-4310
;
hsa-mir-4729
;
hsa-mir-6838-5p
;
hsa-mir-7157-5p
;
hsa-mir-17-5p
;
hsa-mir-20a-5p
;
hsa-mir-93-5p
;
hsa-mir-106a-5p
;
hsa-mir-106b-5p
;
hsa-mir-20b-5p
;
hsa-mir-526b-3p
;
hsa-mir-519d-3p
;
hsa-mir-891b
;
hsa-mir-5586-5p
;
hsa-mir-6849-3p
;
hsa-mir-4781-3p
;
hsa-mir-3120-3p
;
hsa-mir-148a-3p
;
hsa-mir-130a-3p
;
hsa-mir-152-3p
;
hsa-mir-301a-3p
;
hsa-mir-130b-3p
;
hsa-mir-148b-3p
;
hsa-mir-454-3p
;
hsa-mir-301b-3p
;
hsa-mir-4295
;
hsa-mir-3666
;
hsa-mir-3688-3p
;
hsa-mir-4643
;
hsa-mir-506-3p
;
hsa-mir-124-3p
;
hsa-mir-5186
;
hsa-mir-1-5p
;
hsa-mir-4753-5p
;
hsa-mir-513a-5p
;
hsa-mir-6893-3p
;
hsa-mir-370-3p
;
hsa-mir-101-5p
;
hsa-mir-3151-5p
;
hsa-mir-6721-5p
;
hsa-mir-486-3p
;
hsa-mir-4722-5p
;
hsa-mir-1286
;
hsa-mir-6804-5p
;
hsa-mir-4692
;
hsa-mir-4514
;
hsa-mir-940
;
hsa-mir-6893-5p
;
hsa-mir-6808-5p
;
hsa-mir-1825
;
hsa-mir-759
;
hsa-mir-500b-3p
;
hsa-mir-4482-5p
;
hsa-mir-3130-5p
;
hsa-mir-6515-5p
;
hsa-mir-7847-3p
;
hsa-mir-7106-5p
;
hsa-mir-765
;
hsa-mir-766-5p
;
hsa-mir-4533
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6127
;
hsa-mir-6129
;
hsa-mir-4510
;
hsa-mir-4419a
;
hsa-mir-1252-5p
;
hsa-mir-6876-5p
;
hsa-mir-4476
;
hsa-mir-5089-5p
;
hsa-mir-5589-5p
;
hsa-mir-6807-5p
;
hsa-mir-4731-5p
;
hsa-mir-6506-5p
;
hsa-mir-619-5p
;
hsa-mir-512-3p
;
hsa-mir-520e
;
hsa-mir-520d-3p
;
hsa-mir-520c-3p
;
hsa-mir-520b
;
hsa-mir-520a-3p
;
hsa-mir-373-3p
;
hsa-mir-372-3p
;
hsa-mir-302e
;
hsa-mir-302d-3p
;
hsa-mir-302c-3p
;
hsa-mir-302b-3p
;
hsa-mir-302a-3p
;
hsa-mir-3653-3p
;
hsa-mir-299-5p
;
hsa-mir-4511
;
hsa-mir-548b-3p
;
hsa-mir-6863
;
hsa-mir-210-3p
;
hsa-mir-4776-5p
;
hsa-mir-3619-3p
;
hsa-mir-3654
;
hsa-mir-6720-5p
;
hsa-mir-6512-3p
;
hsa-mir-2682-3p
;
hsa-mir-6877-3p
;
hsa-mir-6819-3p
;
hsa-mir-548c-3p
;
hsa-mir-4659b-3p
;
hsa-mir-4659a-3p
;
hsa-mir-6875-3p
;
hsa-mir-744-3p
;
hsa-mir-6868-3p
;
hsa-mir-3667-3p
;
hsa-mir-6734-3p
;
hsa-mir-5096
;
hsa-mir-3187-3p
;
hsa-mir-4435
;
hsa-mir-588
;
hsa-mir-4701-5p
;
hsa-mir-548s
;
hsa-mir-197-3p
;
hsa-mir-6131
;
hsa-mir-4755-3p
;
hsa-mir-302a-5p
;
hsa-mir-3663-5p
;
hsa-mir-3653-5p
;
hsa-mir-627-3p
;
hsa-mir-4742-5p
;
hsa-mir-4433a-3p
;
hsa-mir-181d-5p
;
hsa-mir-181c-5p
;
hsa-mir-181b-5p
;
hsa-mir-181a-5p
;
hsa-mir-1197
;
hsa-mir-4436a
;
hsa-mir-4459
;
hsa-mir-4519
;
hsa-mir-4779
;
hsa-mir-5000-3p
;
hsa-mir-92a-2-5p
;
hsa-mir-129-5p
;
hsa-mir-2113
;
hsa-mir-329-5p
;
hsa-mir-4464
;
hsa-mir-4748
;
hsa-mir-5010-3p
;
hsa-mir-6509-5p
Nearest miRNA
hsa-mir-1286/Upstream/2097738; hsa-let-7a-3/Downstream/727292;
Nearest TSS
ENST00000624155/Upstream/41117;
ENST00000489500/Downstream/91334;
Nearest CpG islands
None/Target,
chr22-CpG: 279/Upstream/40785
,
chr22-CpG: 31/Downstream/259808
Upstream sequence
atgatgatatgtttaggttcatcttatgcatcttctgtctcagccctcagtcatttcttcagggagctctcgttcttttcagcaggaaaggatatatgga
Downstream sequence
ggcacatttggatgctTGAACAATGGATGACAGACTTTTTAATAGATACTTATCAGAATATCTGTAGAGTTCAAAAGATGTCTTCTTTCACCTTGAATTT
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Sample Information
×
Sample name
071552N
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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