Basic Information
VIS ID
TVIS10003921
Fusion event
HBV-LOC105371456 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr1
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
157221998/157252208 (Hg38)
End
157221998/157252208 (Hg38)
Location type
Intronic
Target gene
LOC105371456
Nearest miRNA
hsa-mir-101-1/Upstream/315964; hsa-mir-1182/Downstream/2647771;
Nearest TSS
ENST00000473358/Upstream/15072; ENST00000607010/Downstream/28508;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/56863, chr1-CpG: 28/Downstream/726722
Nearby gene
ETV3(-113615) ; FCRL5(+261169) ;
Upstream sequence
tcccccctttgcttggcacttctccttcaagccaccctgtgaagaaggtgtctttctttcccttagtcttctaccatgattgtaagtttcctgaggcttt
Downstream sequence
ccagacatgtggaactgtgagtcaattaaaccttttttctttaaaaattacccagactagggtatttcttcatagcaatgtgagaatgaactaatacaTG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate