Basic Information
VIS ID
TVIS10003922
Fusion event
HBV-EEF1GP6 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
97198682/96750806 (Hg38)
End
97198682/96750806 (Hg38)
Location type
Intronic
Target gene
EEF1GP6
Nearest miRNA
hsa-mir-10398/Upstream/5229069; hsa-mir-1202/Downstream/1273725;
Nearest TSS
ENST00000381078/Upstream/188222; ENST00000442184/Downstream/34331;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/228582, chr6-CpG: 83/Downstream/86148
Nearby gene
FHL5(-134170) ; GPR63(+43316) ;
Upstream sequence
caatgtttaaacgcaaaaaaaaggtcaggagataaaaggcagaagagagtcatgagaaattctaactaaaataaagctagtacaataacataaatatcaa
Downstream sequence
TGAATATCAATAAGCATACCTCAGAGAATACAGAGGTTGTCAAGTAAACCCTGGGGCTGCTAGAGGTTCATGTGAGGACTAAGAAGTCTCTGGTGAGTGA
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate