ZNF263 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003930
Fusion event
HBV-ZNF263 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3341695/3291695 (Hg38)
End
3341695/3291695 (Hg38)
Location type
Intronic
Target gene
ZNF263
miRNAs that regulate target gene
hsa-mir-192-5p ; hsa-mir-615-3p
Nearest miRNA
hsa-mir-1225/Upstream/759690; hsa-mir-11401/Downstream/193686;
Nearest TSS
ENST00000527434/Upstream/1292; ENST00000612186/Downstream/12177;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/7848, chr16-CpG: 54/Downstream/3450
Nearby gene
ZNF263(-236) ; TIGD7(+7113) ;
Upstream sequence
AGACAGGCAGAGGCAGGTGAGGGCCTGGCAGCCTCCAGGCTGGGACTGCCATGTGGTAACAAAGGGTCAAGCCAAATGGCTGCTGGGGTGATGCTGTCAT
Downstream sequence
AGGGTCTCTAGAAAGTATTCTTTCCTTCTGTGGTCTATAGCAGTAAAAATGTTTTCAATTCTTTGTTTAGAATGTTTACATTCTTACTCAGTAGCTGAGG
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
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