Basic Information
VIS ID
TVIS10003932
Fusion event
HBV-chr16 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p13.12
Reference genome
GRCh37/hg19
Start
14055676/13961819 (Hg38)
End
14055676/13961819 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/1241448; hsa-mir-11401/Downstream/342148;
Nearest TSS
ENST00000527434/Upstream/8664; ENST00000575833/Downstream/54182;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/41381, chr16-CpG: 74/Downstream/109173
Nearby gene
ERCC4(-9471) ; MRTFB(+109520) ;
Nearest cancer related gene
MRTFB(OG, +109520) ;
Upstream sequence
CATACACTACTGTTTGTTTAAGATAGGTGTTTTTGTTTTTAATTGGGCCACTAGTGCCTAGAATCAGAATAATTATAATTATTGGTTTATCAAACACATC
Downstream sequence
ACGGACCCATGCATGACCTGCTCTCATTCATTTAGTTCGTCAtttttatttattttttatttattttattttattttatttttttgagacagattctcgc
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate