Basic Information
VIS ID
TVIS10003935
Fusion event
HBV-LOC107986051 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr3
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
168748164/169030376 (Hg38)
End
168748164/169030376 (Hg38)
Location type
Intronic
Target gene
LOC107986051
Nearest miRNA
hsa-let-7g/Upstream/478427; hsa-mir-1224/Downstream/1392727;
Nearest TSS
ENST00000440867/Upstream/27302; ENST00000480669/Downstream/92296;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/780034, chr3-CpG: 39/Downstream/115866
Nearby gene
PRPF31(-108383) ; MECOM(+53123) ;
Upstream sequence
gctctgcagtggacttttgtcattaatcaagtttgcatacatgcaagcatctatttctatcctctattctgttccattggtctgcttatttattcttgtg
Downstream sequence
ggaagcaaacatgtccctcttcatatggcagcaggaaggagaagtagcaagcaaagtgggtaaaccccttagaaaacccatcagatctcatgagagctta
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate