VISDB Viral Integration Site DataBase

VIS ID

TVIS10003955

Fusion event

HBV-ACBD7 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HBV

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1

Chromosome

chr10

Cytoband

p13

Reference genome

Start

End

15127916/15085917 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-3679-3p ; hsa-mir-2355-5p ; hsa-mir-194-5p ; hsa-mir-3130-3p ; hsa-mir-4286 ; hsa-mir-4716-5p ; hsa-mir-411-3p ; hsa-mir-379-3p ; hsa-mir-7151-5p ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-338-5p ; hsa-mir-1277-5p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-4279 ; hsa-mir-555 ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-5571-5p ; hsa-mir-548e-5p ; hsa-mir-665 ; hsa-mir-1273e ; hsa-mir-6771-5p ; hsa-mir-7977 ; hsa-mir-31-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-5690 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-3123 ; hsa-mir-34b-3p ; hsa-mir-1236-5p ; hsa-mir-214-5p ; hsa-mir-2277-3p ; hsa-mir-4421 ; hsa-mir-542-3p ; hsa-mir-5586-3p ; hsa-mir-5699-3p ; hsa-mir-759

Nearest miRNA

hsa-mir-1265/Upstream/649256; hsa-mir-107/Downstream/2759190;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/126076, chr10-CpG: 59/Downstream/2470

Upstream sequence

CAGTCTGCCAGTATACTTATTCTTGTGTAAATAAATAGAAGACTGGGGACCCTGAACTAGTCACCTTTCCTCTCATTTCCACTCAGTGAGCATCTTGGCA

Downstream sequence

GAACACTAGTACCAATATGATCCCCGCACATGCCAGTGAGGTAATAAAGACAGAAGAGATTTCAATATGTCAGCCAGTTATTAGTTGTCATTTTTAAAAG