Basic Information
VIS ID
TVIS10003969
Fusion event
HBV-LINC00494 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
46988634/48359891 (Hg38)
End
46988634/48359891 (Hg38)
Location type
Promoter
Target gene
LINC00494
Nearest miRNA
hsa-mir-103a-2/Upstream/1192833; hsa-mir-1-1/Downstream/1503968;
Nearest TSS
ENST00000382410/Upstream/286022; ENST00000425021/Downstream/59;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/408468, chr20-CpG: 21/Downstream/13074
Upstream sequence
AGCCTGCTCACCTGGAGACAGTGACCACAGGCCACAGGTCACCCCTCACTGCTTCACTCCACGCcctctcctgtgacctcatctcctcccacctccccct
Downstream sequence
gggtcacgtggctccagccacacccacctccctgctgttcctcacccaggatcaccaaggtctctcctaccccggggcctgtgcacctgctgtgcctctg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate