GNG2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003975
Fusion event
HBV-GNG2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr14
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
52342083/51875365 (Hg38)
End
52342083/51875365 (Hg38)
Location type
Intronic
Target gene
GNG2
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-6881-3p ; hsa-mir-222-5p ; hsa-mir-942-5p ; hsa-mir-877-3p ; hsa-mir-16-1-3p
Nearest miRNA
hsa-mir-208a/Upstream/1575419; hsa-mir-1185-1/Downstream/2073062;
Nearest TSS
ENST00000550708/Upstream/14041; ENST00000556471/Downstream/2227;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/222595, chr14-CpG: 60/Downstream/114045
Upstream sequence
ttgtcacaaaggctctgctataaccggcaggatggaagaagttggaaggggaggccctgacccagaagttacacataccacttttgatgctgtaccattg
Downstream sequence
aattttgtcacatgactgcatacctagcagcaagggaggttggggaaagtagctattattgatatgtaggtgcttagcttagaattctattaaaaccatg
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate