ANKS3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10003983
Fusion event
HBV-ANKS3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
27703150
Virus Sequence
Virus name
HBV
Reference genome
AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
4773871/4723870 (Hg38)
End
4773871/4723870 (Hg38)
Location type
Intronic
Target gene
ANKS3
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-1225/Upstream/52480; hsa-mir-11401/Downstream/908597;
Nearest TSS
ENST00000527434/Upstream/18640; ENST00000586724/Downstream/1252;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/29515, chr16-CpG: 91/Downstream/9991
Upstream sequence
aaggttctgtgtggacaggcttgcacctgtgatcccagcactttgggaggctgaggtgatcgcttgagctcaggaattcaagactagcctgcacaacata
Downstream sequence
ctgagacccccaactctaccaaaaaaaaaaaattaaataattagccggggcatggtagcatgcacctgtagtcccagctacttgggggctgaggcaggag
Reference
Zhao, L. H., et al.Genomic and oncogenic preference of HBV integration in hepatocellular carcinoma. Nat Commun ,2016,7: 12992.
Curate